Blackfynn Data Management

Importing, curating, and collaborating on scientific datasets using the Blackfynn Platform

Joost Wagenaar avatar Kevin Jackson avatar Leonardo Guercio avatar
49 articles in this collection
Written by Joost Wagenaar, Kevin Jackson, and Leonardo Guercio
Importing and managing files

Uploading files to a dataset

How do I upload files to a dataset?
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago

Moving and renaming files and folders

How do I move or rename files and folders on Blackfynn?
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Downloading files and folders

How do I download files and folders on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Associating files with metadata records

How do I link my file to metadata records on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

File Details Page

How can I see details about my files on Blackfynn?
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Supported File Formats

What file formats does the Blackfynn Platform support?
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Viewing Files

How do I view my files on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Discussions in the Web Application

How do you create discussions in the Blackfynn viewers?
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Time Series Viewer

Using the Blackfynn time series viewer for continuous and neural data.
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago

The Digital Image Viewer

Viewing digital pathology slides on the blackfynn platform
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago

Tabular Data Package Viewer

Viewing tabular datasets, such as CSV, in the Blackfynn platform
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

The Clinical Image Viewer

Viewing clinical imaging such as DICOM and NIFTI
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Uploading data using the Blackfynn CLI

How do I upload data using programmatically using the Blackfynn Command Line Interface
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago