Blackfynn Data Management

Importing, curating, and collaborating on scientific datasets using the Blackfynn Platform

Joost Wagenaar avatar Kevin Jackson avatar Leonardo Guercio avatar
55 articles in this collection
Written by Joost Wagenaar, Kevin Jackson, and Leonardo Guercio
Getting Started

Setting up Two Factor Authentication

How do I enable Two Factor Authentication
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago

Signing up for an account

How do I sign up for a Blackfynn account?
Leonardo Guercio avatar
Written by Leonardo Guercio
Updated over a week ago

Setting up your profile

How do I set up my Blackfynn account profile?
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Written by Leonardo Guercio
Updated over a week ago

How to reset your password

I forgot my password, how do I reset it?
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Written by Joost Wagenaar
Updated over a week ago

Getting Help

How do I contact the Blackfynn team for help?
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Written by Leonardo Guercio
Updated over a week ago

Inviting Users to Blackfynn

How do I invite users to my Blackfynn organization?
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Written by Leonardo Guercio
Updated over a week ago

Creating teams on the Blackfynn Platform

How you I create a team within my organization?
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Written by Leonardo Guercio
Updated over a week ago

Download a sample dataset

Do you have any sample data to use with the tutorials?
Joost Wagenaar avatar
Written by Joost Wagenaar
Updated over a week ago

Security and Compliance

What are Blackfynn's security and compliance practices?
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Written by Leonardo Guercio
Updated over a week ago

Closing a Blackfynn account

I want to cancel my subscription, what happens to my account?
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Written by Joost Wagenaar
Updated over a week ago

Blackfynn Data Rescue

How do I extract all my data from the Blackfynn platform?
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Written by Joost Wagenaar
Updated over a week ago

Supported Browsers for Blackfynn Web Application

Which browsers does the Blackfynn platform support?
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Written by Joost Wagenaar
Updated over a week ago
Importing and managing files

Uploading files to a dataset

How do I upload files to a dataset?
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Written by Joost Wagenaar
Updated over a week ago

Moving and renaming files and folders

How do I move or rename files and folders on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Downloading files and folders

How do I download files and folders on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Associating files with metadata records

How do I link my file to metadata records on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

File Details Page

How can I see details about my files on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Supported File Formats

What file formats does the Blackfynn Platform support?
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Written by Leonardo Guercio
Updated over a week ago

Viewing Files

How do I view my files on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Discussions in the Web Application

How do you create discussions in the Blackfynn viewers?
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Written by Leonardo Guercio
Updated over a week ago

Time Series Viewer

Using the Blackfynn time series viewer for continuous and neural data.
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Written by Joost Wagenaar
Updated over a week ago

The Digital Image Viewer

Viewing digital pathology slides on the blackfynn platform
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Written by Joost Wagenaar
Updated over a week ago

Tabular Data Package Viewer

Viewing tabular datasets, such as CSV, in the Blackfynn platform
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Written by Leonardo Guercio
Updated over a week ago

The Clinical Image Viewer

Viewing clinical imaging such as DICOM and NIFTI
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Written by Leonardo Guercio
Updated over a week ago

Uploading data using the Blackfynn CLI

How do I upload data using programmatically using the Blackfynn Command Line Interface
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Written by Joost Wagenaar
Updated over a week ago
Publishing Data

Overview of Data Publishing on Blackfynn

What is data publishing on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Adding Publishers to your Blackfynn organization

How do I add publishers to my organization on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Submitting datasets for publication on Blackfynn

How do I submit a dataset for publication on Blackfynn?
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Written by Leonardo Guercio
Updated over a week ago

Reviewing and Accepting Datasets for Publication

How do you review and publish datasets on Blackfynn as a publisher?
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Written by Leonardo Guercio
Updated over a week ago

Submitting a revision of a dataset for publication

What is the difference between submitting a new version of a dataset and creating a revision?
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Written by Leonardo Guercio
Updated over a week ago

Preventing files from being included during publishing

The Publish ignore list allows you to specify which files to ignore during publication
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Written by Joost Wagenaar
Updated over a week ago

ORCID iDs on the Blackfynn platform

How do I link my ORCID iD to my Blackfynn profile?
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Written by Leonardo Guercio
Updated over a week ago

Digital Object Identifiers (DOIs)

What is a DOI? How does my dataset get a DOI?
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Written by Leonardo Guercio
Updated over a week ago

Common Dataset Licenses

Add licenses to your datasets to protect your work.
Kevin Jackson avatar
Written by Kevin Jackson
Updated over a week ago

Markdown Guide

Tips for composing content using Markdown.
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Written by Kevin Jackson
Updated over a week ago